Basic Information
Locus ID:
gene:TRIDC2BG076780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 724843537 | 724847462 | - | gene:TRIDC2BG076780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 26,512.46 Da | 40.83 | 73.21 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08069 | MPN_RPN11_CSN5 | 86 | 243 | 1.24459E-114 | - |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 95 | 205 | 3.5E-33 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 98 | 215 | 1.16E-13 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 40 | 243 | 3.4E-85 | - |
| SMART | SM00232 | pad1_6 | 96 | 233 | 5.6E-45 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 97 | 234 | 31.02684 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71230.1 | COP9-signalosome 5B. Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses. | 0 |
| RefSeq | XP_037487569.1 | COP9 signalosome complex subunit 5 isoform X1 [Triticum dicoccoides] | 0 |
| Q8H936 | COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453D6M2 | MPN domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG076780.