Basic Information
Locus ID:
gene:TRIDC2BG072960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 694235754 | 694241970 | - | gene:TRIDC2BG072960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 115,368.09 Da | 47.39 | 80.07 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 871 | 1003 | 1.14385E-57 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 249 | 600 | 1.69353E-86 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 737 | 773 | 4.0E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 895 | 993 | 3.4E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 263 | 677 | 9.1E-68 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 716 | 774 | 5.74E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 215 | 600 | 2.21E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 609 | 1050 | 1.5E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 828 | 1046 | 3.7E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 461 | 614 | 3.3E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 615 | 720 | 2.0E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 220 | 308 | 9.9E-12 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 721 | 779 | 1.9E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 367 | 456 | 4.5E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 245 | 567 | 4.9E-24 | IPR014001 |
| SMART | SM00184 | ring_2 | 717 | 768 | 1.5E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 910 | 993 | 2.8E-19 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 385 | 562 | 11.313871 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 717 | 769 | 11.382803 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 874 | 1046 | 14.203644 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 746 | 755 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 382 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037487337.1 | helicase-like transcription factor CHR28 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CDI4 | Helicase-like transcription factor CHR28 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG072960.