Basic Information
Locus ID:
gene:TRIDC2BG072370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 690341144 | 690343241 | + | gene:TRIDC2BG072370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 73,367.16 Da | 41.87 | 104.60 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 286 | 328 | 1.61847E-21 | - |
| Pfam | PF04564 | U-box domain | 285 | 350 | 9.5E-15 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 419 | 455 | 4.9E-5 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 281 | 355 | 6.28E-22 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 387 | 667 | 1.97E-32 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 483 | 671 | 1.2E-16 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 356 | 482 | 2.0E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 354 | 7.6E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 285 | 348 | 2.1E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 281 | 355 | 27.980715 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 427 | 469 | 12.4774 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60190.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037489592.1 | U-box domain-containing protein 19-like [Triticum dicoccoides] | 0 |
| O80742 | U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6CDH9 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG072370.