halophFGD

Basic Information

Locus ID: gene:TRIDC2BG069930

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Ribosomal_L40e

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
2B	673801811	673803810	-	gene:TRIDC2BG069930

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.84	11,942.85 Da	41.36	85.52	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	2	38	5.2E-14	IPR000626
Pfam	PF01020	Ribosomal L40e family	53	101	1.7E-25	IPR001975
SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	51	103	4.21E-15	IPR011332
SUPERFAMILY	SSF54236	Ubiquitin-like	2	51	1.36E-14	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	53	1.7E-19	-
Gene3D	G3DSA:4.10.1060.50	-	54	103	4.9E-23	IPR038587
SMART	SM01377	Ribosomal_L40e_3	52	103	1.7E-25	IPR001975
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	43	16.123894	IPR000626

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02927 (ubiquitin-large subunit ribosomal protein L40e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.
RefSeq	XP_037489531.1	ubiquitin-like [Triticum dicoccoides]
Swiss-Prot	B9DHA6	Ubiquitin-ribosomal protein eL40z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1
TrEMBL	A0A3B6CF88	Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC2BG069930.