Basic Information
Locus ID:
gene:TRIDC2BG069910
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
intracellular transport of virus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 673664170 | 673686273 | - | gene:TRIDC2BG069910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 25,621.19 Da | 39.78 | 90.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01020 | Ribosomal L40e family | 86 | 106 | 2.2E-5 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 155 | 225 | 3.9E-26 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 73 | 1.2E-25 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 137 | 228 | 3.6E-28 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 77 | 4.44E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 88 | 2.0E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 147 | 228 | 1.3E-36 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 1.2E-25 | IPR000626 |
| SMART | SM00213 | ubq_7 | 153 | 224 | 5.5E-26 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 153 | 228 | 25.50909 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 25.400213 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 179 | 204 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 1.4E-27 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 1.4E-27 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 1.4E-27 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_043620159.1 | ubiquitin-60S ribosomal protein L40-like [Erigeron canadensis] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453IGY4 | Ubiquitin OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG069910.