Basic Information
Locus ID:
gene:TRIDC2BG069500
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 671094826 | 671099536 | - | gene:TRIDC2BG069500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 61,452.01 Da | 39.64 | 84.03 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 96 | 353 | 5.80576E-139 | - |
| Pfam | PF00069 | Protein kinase domain | 96 | 354 | 5.4E-72 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 402 | 462 | 4.8E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 472 | 532 | 1.3E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 378 | 535 | 4.21E-47 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 96 | 368 | 3.37E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 364 | 536 | 9.6E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 182 | 363 | 8.9E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 98 | 181 | 1.1E-27 | - |
| SMART | SM00054 | efh_1 | 507 | 535 | 2.2E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 96 | 354 | 2.9E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 401 | 429 | 4.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 473 | 501 | 0.0015 | IPR002048 |
| SMART | SM00054 | efh_1 | 437 | 465 | 0.08 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 397 | 432 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 96 | 354 | 47.212521 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 469 | 504 | 14.680779 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 433 | 468 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 505 | 538 | 11.500702 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 446 | 458 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 482 | 494 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 216 | 228 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 516 | 528 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 410 | 422 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 102 | 125 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 0 |
| RefSeq | XP_037487168.1 | calcium-dependent protein kinase 13 [Triticum dicoccoides] | 0 |
| Q9FXQ3 | Calcium-dependent protein kinase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK13 PE=2 SV=1 | 0 | |
| TrEMBL | K4MQ41 | Calcium-dependent protein kinase OS=Triticum aestivum OX=4565 GN=CDPK2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG069500.