Basic Information
Locus ID:
gene:TRIDC2BG068630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 664968324 | 664969964 | - | gene:TRIDC2BG068630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 44,568.24 Da | 44.24 | 99.22 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 4 | 47 | 1.79782E-22 | - |
| Pfam | PF04564 | U-box domain | 1 | 69 | 3.9E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 71 | 9.08E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 106 | 388 | 1.08E-20 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 79 | 262 | 1.0E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 75 | 1.2E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 263 | 393 | 1.1E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 3 | 67 | 2.5E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 74 | 32.005508 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037487126.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453CX63 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG068630.