Basic Information
Locus ID:
gene:TRIDC2BG068140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Utp13 specific WD40 associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 660827416 | 660833468 | + | gene:TRIDC2BG068140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 82,776.58 Da | 38.29 | 89.24 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 237 | 539 | 1.86183E-62 | - |
| Pfam | PF08625 | Utp13 specific WD40 associated domain | 562 | 695 | 3.1E-44 | IPR013934 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 361 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 74 | 111 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 319 | 6.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 455 | 4.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 414 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 539 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 497 | 5.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 31 | 69 | 6.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 295 | 3.3E-45 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 233 | 539 | 7.69E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 226 | 417 | 1.8E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 418 | 585 | 5.0E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 225 | 1.2E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 540 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 111 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 498 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 69 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 2.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 319 | 5.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 362 | 3.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 361 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 507 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 328 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 321 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 27 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 415 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 415 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 508 | 539 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 465 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 508 | 539 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 35 | 78 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 79 | 120 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 466 | 500 | 9.836508 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 35 | 72 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 79 | 113 | 11.787407 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 98 | 112 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 306 | 320 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 12 | 26 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 56 | 70 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 306 | 320 | 2.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 349 | 363 | 2.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 56 | 70 | 2.2E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 749 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. | 0 |
| RefSeq | XP_044440794.1 | transducin beta-like protein 3 isoform X2 [Triticum aestivum] | 0 |
| Q9LFE2 | Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 | 0 | |
| TrEMBL | A0A453T5R0 | Utp13 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG068140.