Basic Information
Locus ID:
gene:TRIDC2BG067170
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Cobalamin synthesis protein cobW C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 651609679 | 651612129 | - | gene:TRIDC2BG067170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 53,807.00 Da | 48.60 | 74.27 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 189 | 462 | 5.64679E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 462 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 377 | 0.023 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 206 | 264 | 4.0E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 6.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 167 | 466 | 3.84E-58 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 465 | 2.4E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 380 | 420 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 8.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 3.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 462 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 280 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 377 | 0.0018 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 325 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 430 | 463 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 239 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 248 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 463 | 12.74747 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 310 | 324 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 449 | 463 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_037487043.1 | cell division cycle 20.2, cofactor of APC complex-like [Triticum dicoccoides] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CC97 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG067170.