Basic Information
Locus ID:
gene:TRIDC2BG061000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 600009078 | 600012784 | - | gene:TRIDC2BG061000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 74,866.39 Da | 49.12 | 64.66 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 369 | 406 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 363 | 3.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 261 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 539 | 0.067 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 227 | 674 | 2.75E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 576 | 1.4E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 408 | 447 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 539 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 364 | 9.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 8.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 675 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 497 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 406 | 6.4E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 516 | 539 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 230 | 261 | 13.369217 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 373 | 407 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 271 | 16.423473 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 373 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 373 | 407 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 333 | 365 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 351 | 365 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 249 | 263 | 7.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 393 | 407 | 7.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 351 | 365 | 7.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037486688.1 | uncharacterized WD repeat-containing protein C18H10.05-like [Triticum dicoccoides] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CD79 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG061000.