Basic Information
Locus ID:
gene:TRIDC2BG059220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the class-I aminoacyl-tRNA synthetase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 579606960 | 579625078 | - | gene:TRIDC2BG059220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 205,305.50 Da | 49.57 | 83.46 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07962 | Anticodon_Ia_Val | 966 | 1105 | 5.96027E-40 | IPR033705 |
| Pfam | PF08264 | Anticodon-binding domain of tRNA ligase | 1012 | 1149 | 2.7E-28 | IPR013155 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 536 | 608 | 1.4E-9 | IPR002300 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 170 | 455 | 5.2E-44 | IPR001394 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 678 | 966 | 4.4E-50 | IPR002300 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 523 | 975 | 6.93E-66 | - |
| SUPERFAMILY | SSF47323 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 979 | 1202 | 7.48E-39 | IPR009080 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 163 | 457 | 4.71E-74 | IPR038765 |
| Gene3D | G3DSA:1.10.730.10 | - | 930 | 1155 | 6.9E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 161 | 459 | 9.2E-77 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 544 | 889 | 1.9E-74 | IPR014729 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 161 | 458 | 44.924187 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 400 | 418 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 505 | - | - |
| Coils | Coil | Coil | 917 | 937 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14610.1 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS). Required for proper proliferation of basal cells. | 0 |
| RefSeq | XP_037486559.1 | uncharacterized protein LOC119365074 isoform X1 [Triticum dicoccoides] | 0 |
| P93736 | Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=TWN2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6TAX9 | valine--tRNA ligase OS=Panicum miliaceum OX=4540 GN=C2845_PM03G05600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG059220.