Basic Information
Locus ID:
gene:TRIDC2BG055790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 546291208 | 546296421 | - | gene:TRIDC2BG055790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 70,699.54 Da | 61.92 | 77.06 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 28 | 72 | 6.47231E-11 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 555 | 626 | 2.7E-20 | IPR032838 |
| Pfam | PF17123 | RING-like zinc finger | 28 | 57 | 1.6E-8 | IPR001841 |
| Pfam | PF00092 | von Willebrand factor type A domain | 210 | 390 | 4.5E-25 | IPR002035 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 79 | 5.78E-14 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 206 | 393 | 5.7E-34 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 77 | 2.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 210 | 394 | 8.2E-45 | IPR036465 |
| SMART | SM00327 | VWA_4 | 208 | 392 | 4.3E-27 | IPR002035 |
| SMART | SM00184 | ring_2 | 28 | 71 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 72 | 11.987676 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 210 | 393 | 18.1952 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 647 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38970.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037486317.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C9M5 | Zinc finger (C3HC4-type RING finger) family protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG055790.