Basic Information
Locus ID:
gene:TRIDC2BG055440
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
VFB1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 542858406 | 542861182 | - | gene:TRIDC2BG055440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 53,744.99 Da | 49.41 | 99.76 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 74 | 106 | 6.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 63 | 105 | 1.57E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 127 | 479 | 1.48E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 391 | 2.9E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 392 | 484 | 1.9E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 111 | 4.9E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 114 | 246 | 1.3E-11 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 192 | 216 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 456 | 483 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 405 | 430 | 0.56 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 166 | 191 | 68.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 431 | 455 | 0.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 326 | 351 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 352 | 379 | 30.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67250.1 | SKP1/ASK1-interacting protein 2. Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | 0 |
| RefSeq | XP_037486288.1 | F-box protein At1g47056-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FE83 | F-box protein SKIP2 OS=Arabidopsis thaliana OX=3702 GN=SKIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B1V3 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG055440.