Basic Information
Locus ID:
gene:TRIDC2BG055280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 541266070 | 541267984 | - | gene:TRIDC2BG055280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 64,116.37 Da | 46.70 | 81.86 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 10 | 54 | 7.06643E-9 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 522 | 565 | 1.7E-10 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 168 | 353 | 2.4E-20 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 10 | 39 | 9.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 70 | 9.19E-13 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 164 | 356 | 3.48E-31 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 168 | 357 | 8.0E-44 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 3.2E-10 | IPR013083 |
| SMART | SM00327 | VWA_4 | 166 | 352 | 7.5E-19 | IPR002035 |
| SMART | SM00184 | ring_2 | 10 | 53 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 168 | 363 | 14.197617 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 10 | 54 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 116 | - | - |
| Coils | Coil | Coil | 488 | 508 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037486273.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C9A2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG055280.