Basic Information
Locus ID:
gene:TRIDC2BG053530
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 523211733 | 523216667 | + | gene:TRIDC2BG053530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 77,452.51 Da | 47.73 | 92.95 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 279 | 321 | 1.01757E-24 | - |
| Pfam | PF04564 | U-box domain | 276 | 345 | 6.8E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 351 | 8.58E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 456 | 701 | 1.69E-24 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 274 | 348 | 1.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 563 | 701 | 1.3E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 441 | 562 | 1.9E-10 | IPR011989 |
| SMART | SM00185 | arm_5 | 520 | 558 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 474 | 518 | 21.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 278 | 341 | 7.5E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 559 | 602 | 6.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 274 | 348 | 41.169655 | IPR003613 |
| Coils | Coil | Coil | 175 | 202 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27910.1 | plant U-box 45. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037486129.1 | U-box domain-containing protein 6-like [Triticum dicoccoides] | 0 |
| Q9C7G1 | U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C8Y6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG053530.