Basic Information
Locus ID:
gene:TRIDC2BG052150
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 511428314 | 511429977 | - | gene:TRIDC2BG052150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 46,158.57 Da | 42.36 | 85.19 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 130 | 440 | 1.04623E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 130 | 162 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 333 | 0.091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 207 | 236 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 389 | 440 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 378 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 441 | 5.68E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 446 | 5.5E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 294 | 2.9E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 120 | 163 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 7.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 278 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 9.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 440 | 0.062 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 379 | 4.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 302 | 343 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 302 | 334 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 277 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 236 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 277 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 378 | 9.639578 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 366 | 380 | 6.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 427 | 441 | 6.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 6.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037486024.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CB39 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG052150.