Basic Information
Locus ID:
gene:TRIDC2BG050410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
PUX4
Description:
SEP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 492076900 | 492081177 | + | gene:TRIDC2BG050410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 36,264.51 Da | 55.47 | 57.13 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01770 | UBX_UBXN2 | 271 | 341 | 1.05362E-40 | - |
| Pfam | PF08059 | SEP domain | 159 | 232 | 2.8E-25 | IPR012989 |
| Pfam | PF00789 | UBX domain | 268 | 341 | 1.1E-17 | IPR001012 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 146 | 239 | 2.49E-28 | IPR036241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 227 | 340 | 3.19E-27 | IPR029071 |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 153 | 216 | 4.4E-26 | IPR036241 |
| Gene3D | G3DSA:3.10.20.90 | - | 220 | 342 | 3.5E-39 | - |
| SMART | SM00553 | faf_3 | 151 | 244 | 7.7E-42 | IPR012989 |
| SMART | SM00166 | ubx_3 | 264 | 342 | 1.8E-8 | IPR001012 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 265 | 341 | 19.925266 | IPR001012 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 154 | 219 | 33.243546 | IPR012989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 252 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04210.1 | plant UBX domain containing protein 4. Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) | 0 |
| RefSeq | XP_037485911.1 | plant UBX domain-containing protein 4-like [Triticum dicoccoides] | 0 |
| Q8RWU7 | Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I7B6R2 | UBX domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG050410.