Basic Information
Locus ID:
gene:TRIDC2BG046090
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 449359326 | 449361210 | + | gene:TRIDC2BG046090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 51,101.39 Da | 50.02 | 96.79 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 79 | 120 | 1.05979E-23 | - |
| Pfam | PF04564 | U-box domain | 75 | 144 | 7.8E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 273 | 471 | 4.14E-7 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 143 | 5.3E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 324 | 471 | 1.8E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 147 | 1.2E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 78 | 141 | 5.8E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 74 | 148 | 36.437206 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64660.1 | CYS, MET, PRO, and GLY protein 2. | 0 |
| RefSeq | XP_020153682.3 | U-box domain-containing protein 27 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9FLF4 | U-box domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=PUB27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453BYM3 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG046090.