Basic Information
Locus ID:
gene:TRIDC2BG046000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 448512314 | 448513683 | - | gene:TRIDC2BG046000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 46,524.19 Da | 41.70 | 95.50 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 57 | 3.04625E-22 | - |
| Pfam | PF04564 | U-box domain | 10 | 83 | 2.2E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 395 | 2.26E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 88 | 3.68E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 88 | 6.0E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 109 | 406 | 2.5E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 13 | 79 | 8.5E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 86 | 35.977226 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037489130.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C784 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG046000.