Basic Information
Locus ID:
gene:TRIDC2BG043770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Vacuolar protein sorting protein 11 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 421244865 | 421250200 | + | gene:TRIDC2BG043770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 102,671.53 Da | 39.22 | 90.40 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16688 | RING-H2_Vps11 | 812 | 852 | 1.11978E-21 | - |
| Pfam | PF12451 | Vacuolar protein sorting protein 11 C terminal | 854 | 896 | 7.7E-14 | IPR024763 |
| Pfam | PF00637 | Region in Clathrin and VPS | 356 | 473 | 3.3E-14 | IPR000547 |
| SUPERFAMILY | SSF57850 | RING/U-box | 813 | 854 | 3.05E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 296 | 593 | 8.6E-8 | IPR011990 |
| PIRSF | PIRSF007860 | Vps11 | 1 | 523 | 1.3E-170 | IPR016528 |
| PIRSF | PIRSF007860 | Vps11 | 518 | 903 | 2.0E-103 | IPR016528 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 348 | 499 | 25.45709 | IPR000547 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 517 | 728 | 11.564754 | IPR000547 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 814 | 849 | 9.287877 | IPR001841 |
| Coils | Coil | Coil | 771 | 805 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05170.1 | vacuolar protein sorting 11. Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. | 0 |
| RefSeq | XP_037485391.1 | vacuolar protein-sorting-associated protein 11 homolog [Triticum dicoccoides] | 0 |
| Q9SJ40 | Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C8Y0 | Vacuolar protein sorting-associated protein 11 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG043770.