Basic Information
Locus ID:
gene:TRIDC2BG040020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PFU (PLAA family ubiquitin binding)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 381727199 | 381738399 | + | gene:TRIDC2BG040020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 87,558.40 Da | 32.96 | 91.30 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 53 | 336 | 3.05469E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 180 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 299 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 87 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 336 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 258 | 5.9E-6 | IPR001680 |
| Pfam | PF09070 | PFU (PLAA family ubiquitin binding) | 383 | 492 | 6.5E-36 | IPR015155 |
| Pfam | PF08324 | PUL domain | 530 | 795 | 5.3E-54 | IPR013535 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 348 | 4.58E-60 | IPR036322 |
| Gene3D | G3DSA:3.10.20.870 | - | 423 | 495 | 1.3E-25 | IPR038122 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 356 | 1.6E-75 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 528 | 799 | 7.1E-65 | IPR011989 |
| SMART | SM00320 | WD40_4 | 300 | 337 | 3.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 181 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 140 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 259 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 220 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 299 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 88 | 3.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 268 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 299 | 9.282875 | - |
| ProSiteProfiles | PS51396 | PUL domain profile. | 528 | 799 | 28.231783 | IPR013535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 180 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 220 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 228 | 258 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 299 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS51394 | PFU domain profile. | 403 | 499 | 34.070587 | IPR015155 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 149 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 87 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 127 | 141 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 207 | 221 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 1.8E-5 | IPR020472 |
| Coils | Coil | Coil | 729 | 749 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044457106.1 | phospholipase A-2-activating protein-like [Triticum aestivum] | 0 |
| P27612 | Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4 | 0 | |
| TrEMBL | A0A453BNR2 | Phospholipase A-2-activating protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG040020.