Basic Information
Locus ID:
gene:TRIDC2BG035760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 309049068 | 309067331 | + | gene:TRIDC2BG035760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 62,593.36 Da | 33.35 | 71.99 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 204 | 514 | 1.09972E-85 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 238 | 6.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 514 | 6.0E-9 | IPR001680 |
| Pfam | PF08513 | LisH | 8 | 33 | 6.8E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 421 | 3.9E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 297 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 471 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 556 | 7.6E-85 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 195 | 558 | 1.2E-149 | IPR015943 |
| Gene3D | G3DSA:1.20.960.30 | - | 2 | 90 | 1.3E-28 | - |
| SMART | SM00667 | Lish | 5 | 37 | 4.4E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 5.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 514 | 1.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 297 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 472 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 379 | 0.0062 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 421 | 1.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 555 | 0.36 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 431 | 481 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 430 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 240 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 341 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 297 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 240 | 12.499222 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 297 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 482 | 519 | 13.764669 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 389 | 423 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 10.135469 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 482 | 523 | 18.161219 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 459 | 473 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 226 | 240 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 179 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
| Coils | Coil | Coil | 140 | 160 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67320.1 | WD-40 repeat family protein. Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. | 0 |
| RefSeq | XP_037484890.1 | WD40 repeat-containing protein HOS15-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FN19 | WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana OX=3702 GN=HOS15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6C4P5 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG035760.