Basic Information
Locus ID:
gene:TRIDC2BG033740
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 261950027 | 261966035 | - | gene:TRIDC2BG033740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 61,939.31 Da | 51.73 | 82.31 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 370 | 506 | 4.57388E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 384 | 495 | 2.7E-12 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 79 | 274 | 1.8E-17 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 297 | 337 | 6.0E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 342 | 6.63E-14 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 210 | 550 | 5.98E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 79 | 199 | 2.92E-9 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 371 | 7.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 78 | 214 | 6.0E-16 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 215 | 551 | 1.4E-62 | IPR027417 |
| SMART | SM00490 | helicmild6 | 412 | 495 | 3.1E-14 | IPR001650 |
| SMART | SM00184 | ring_2 | 298 | 337 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 381 | 541 | 13.73558 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 298 | 338 | 12.149959 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 313 | 322 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05120.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_044323466.1 | DNA repair protein RAD16-like [Triticum aestivum] | 0 |
| P31244 | DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C5I2 | DNA repair protein RAD16 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG033740.