Basic Information
Locus ID:
gene:TRIDC2BG029800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 217341885 | 217345480 | - | gene:TRIDC2BG029800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 36,103.61 Da | 37.81 | 80.48 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 22 | 328 | 1.31984E-72 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 28 | 53 | 0.0044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 154 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 285 | 2.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 196 | 1.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 328 | 3.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 65 | 99 | 3.3E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 328 | 3.66E-82 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 332 | 1.1E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 243 | 285 | 8.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 154 | 7.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 18 | 57 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 60 | 99 | 7.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 329 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 9.3E-12 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 196 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 15.989036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 102 | 13.711943 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 67 | 102 | 16.690819 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 163 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 121 | 159 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 25 | 55 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 294 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 86 | 100 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 272 | 286 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 141 | 155 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 86 | 100 | 7.4E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 183 | 197 | 7.4E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 7.4E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02730.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037484458.1 | COMPASS-like H3K4 histone methylase component WDR5B [Triticum dicoccoides] | 0 |
| Q9SY00 | COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana OX=3702 GN=WDR5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C630 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG029800.