Basic Information
Locus ID:
gene:TRIDC2BG026650
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 190041567 | 190046228 | + | gene:TRIDC2BG026650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 52,158.24 Da | 44.60 | 76.44 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 151 | 471 | 2.12113E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 397 | 434 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 225 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 276 | 4.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 346 | 0.0017 | IPR001680 |
| Pfam | PF08154 | NLE (NUC135) domain | 54 | 121 | 2.2E-16 | IPR012972 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 149 | 473 | 3.11E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 480 | 1.0E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 308 | 346 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 179 | 0.08 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 475 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 226 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 434 | 2.8E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 351 | 8.834696 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 279 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 401 | 443 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 401 | 437 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 355 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 421 | 435 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 421 | 435 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 1.5E-5 | IPR020472 |
| Hamap | MF_03029 | Ribosome biogenesis protein @gn(WDR12) [WDR12]. | 48 | 478 | 30.674513 | IPR028599 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037484271.1 | ribosome biogenesis protein WDR12 homolog [Triticum dicoccoides] | 0 |
| Q8H594 | Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=WDR12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6C2V5 | Ribosome biogenesis protein WDR12 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG026650.