Basic Information
Locus ID:
gene:TRIDC2BG026280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Pex2 / Pex12 amino terminal region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 187528615 | 187533947 | + | gene:TRIDC2BG026280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 38,757.67 Da | 52.09 | 83.68 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16527 | RING-HC_PEX10 | 291 | 329 | 5.79972E-24 | - |
| Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 2 | 232 | 1.0E-49 | IPR006845 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 288 | 334 | 1.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 334 | 5.61E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 342 | 3.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 291 | 328 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 291 | 329 | 13.330199 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 306 | 315 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 127 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26350.1 | peroxin 10. Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis. | 0 |
| RefSeq | XP_037484201.1 | peroxisome biogenesis factor 10-like [Triticum dicoccoides] | 0 |
| Q9SYU4 | Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana OX=3702 GN=PEX10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6D9K9 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG026280.