Basic Information
Locus ID:
gene:TRIDC2BG025830
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 182399948 | 182405418 | - | gene:TRIDC2BG025830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 50,979.34 Da | 47.83 | 67.93 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 177 | 455 | 2.80078E-83 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 370 | 4.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 245 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 328 | 4.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 455 | 1.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 286 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 203 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 165 | 454 | 8.11E-87 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 336 | 2.7E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 337 | 465 | 1.0E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 373 | 413 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 455 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 370 | 4.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 203 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 245 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 9.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 3.8E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 338 | 373 | 12.393768 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 423 | 455 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 245 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 380 | 422 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 290 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 379 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 333 | 11.681953 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 213 | 245 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 295 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 423 | 455 | 14.05078 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 357 | 371 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 273 | 287 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 357 | 371 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 1.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41500.1 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | 0 |
| RefSeq | XP_044322900.1 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Triticum aestivum] | 0 |
| O22212 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6C2Q3 | SFM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG025830.