Basic Information
Locus ID:
gene:TRIDC2BG021920
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 148911210 | 148915181 | - | gene:TRIDC2BG021920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 82,949.71 Da | 56.34 | 94.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16536 | RING-HC_RNF10 | 497 | 535 | 1.92312E-13 | - |
| CDD | cd18793 | SF2_C_SNF | 567 | 697 | 1.6171E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 570 | 686 | 1.0E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 121 | 455 | 2.7E-79 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 494 | 540 | 9.3E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 395 | 744 | 8.93E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 490 | 541 | 1.02E-14 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 381 | 6.31E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 152 | 382 | 1.2E-52 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 483 | 547 | 1.3E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 396 | 746 | 3.9E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 114 | 350 | 5.4E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 601 | 686 | 2.4E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 497 | 535 | 2.5E-6 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 160 | 343 | 16.677023 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 570 | 739 | 15.846847 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 497 | 536 | 12.533537 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 512 | 521 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05130.1 | DNA/RNA helicase protein. | 0 |
| RefSeq | XP_037483921.1 | putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Triticum dicoccoides] | 0 |
| Q9FF61 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana OX=3702 GN=At5g05130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6C4B6 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG021920.