Basic Information
Locus ID:
gene:TRIDC2BG020790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 Ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 141598334 | 141603649 | + | gene:TRIDC2BG020790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 38,485.06 Da | 40.72 | 92.85 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16515 | RING-HC_LRSAM1 | 307 | 345 | 5.12334E-21 | - |
| Pfam | PF12483 | E3 Ubiquitin ligase | 101 | 250 | 1.8E-34 | IPR022170 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 305 | 347 | 3.7E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 348 | 1.37E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 353 | 6.3E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 307 | 342 | 11.397556 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63900.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_037483843.1 | E3 ubiquitin-protein ligase SP1-like [Triticum dicoccoides] | 0 |
| Q8L7N4 | E3 ubiquitin-protein ligase SP1 OS=Arabidopsis thaliana OX=3702 GN=SP1 PE=1 SV=1 | 0 | |
| TrEMBL | W5C7M2 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG020790.