Basic Information
Locus ID:
gene:TRIDC2BG019970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 136104875 | 136114640 | + | gene:TRIDC2BG019970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 121,960.97 Da | 48.85 | 74.80 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12931 | Sec23-binding domain of Sec16 | 540 | 733 | 1.5E-8 | IPR024298 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 325 | 2.44E-47 | IPR036322 |
| Gene3D | G3DSA:1.20.940.10 | Functional domain of the splicing factor Prp18 | 1011 | 1124 | 1.7E-27 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 326 | 1.5E-95 | IPR015943 |
| Gene3D | G3DSA:1.25.40.1030 | - | 344 | 756 | 4.7E-116 | - |
| SMART | SM00320 | WD40_4 | 100 | 140 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 190 | 0.56 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 281 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 237 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 88 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 55.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 107 | 143 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 199 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 290 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 143 | 11.07656 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 177 | 191 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 942 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1009 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 942 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037483808.1 | protein transport protein SEC31 homolog B-like [Triticum dicoccoides] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C182 | Sec16_C domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG019970.