Basic Information
Locus ID:
gene:TRIDC2BG018780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
DDT domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 121324720 | 121334322 | + | gene:TRIDC2BG018780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 204,543.44 Da | 52.55 | 72.51 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 426 | 467 | 1.01681E-16 | - |
| Pfam | PF02791 | DDT domain | 231 | 282 | 3.9E-12 | IPR018501 |
| Pfam | PF00628 | PHD-finger | 426 | 469 | 5.8E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 412 | 472 | 2.66E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1176 | 1224 | 3.32E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1387 | 1444 | 4.65E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 413 | 488 | 2.5E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1384 | 1444 | 2.1E-11 | IPR013083 |
| SMART | SM00571 | testlast3 | 228 | 288 | 4.3E-9 | IPR018501 |
| SMART | SM00249 | PHD_3 | 425 | 468 | 4.7E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1390 | 1438 | 0.23 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1178 | 1223 | 31.0 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 423 | 470 | 10.1842 | IPR019787 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 228 | 288 | 14.800827 | IPR018501 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 426 | 467 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1290 | 1311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1230 | 1339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1521 | 1549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1312 | 1336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1239 | 1281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 660 | - | - |
| Coils | Coil | Coil | 1145 | 1174 | - | - |
| Coils | Coil | Coil | 143 | 163 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12400.1 | DNA binding;zinc ion binding;DNA binding. | 0 |
| RefSeq | XP_037483740.1 | DDT domain-containing protein PTM-like [Triticum dicoccoides] | 0 |
| F4JYC8 | DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C0Z5 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG018780.