Basic Information
Locus ID:
gene:TRIDC2BG018750
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 120743397 | 120747255 | - | gene:TRIDC2BG018750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 42,972.48 Da | 36.73 | 77.58 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 103 | 392 | 2.73263E-74 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 309 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 102 | 137 | 1.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 222 | 2.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 265 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 350 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 180 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 392 | 5.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 59 | 393 | 1.43E-80 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 395 | 1.3E-95 | IPR015943 |
| SMART | SM00320 | WD40_4 | 225 | 267 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 180 | 8.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 8.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 5.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 392 | 5.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 95 | 0.094 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 350 | 7.0E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 276 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 189 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 105 | 146 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 318 | 350 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 397 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 310 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 104 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 16.222963 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 105 | 137 | 12.024679 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 360 | 397 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 359 | 12.74747 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 337 | 351 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 296 | 310 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 3.1E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037483738.1 | angio-associated migratory cell protein-like [Triticum dicoccoides] | 0 |
| Q13685 | Angio-associated migratory cell protein OS=Homo sapiens OX=9606 GN=AAMP PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6C3K9 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG018750.