Basic Information
Locus ID:
gene:TRIDC2BG016470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 105294656 | 105298258 | + | gene:TRIDC2BG016470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 38,020.71 Da | 55.15 | 74.49 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14482 | SPX_BAH1-like | 2 | 158 | 1.15699E-75 | - |
| Pfam | PF13445 | RING-type zinc-finger | 230 | 276 | 6.4E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 282 | 1.64E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 331 | 9.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 278 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 1 | 162 | 14.653961 | IPR004331 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 279 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 55 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02860.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein. Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827. | 0 |
| RefSeq | XP_037488752.1 | probable E3 ubiquitin-protein ligase BAH1-like 1 [Triticum dicoccoides] | 0 |
| B8B5U8 | Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27296 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6C0I0 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG016470.