Basic Information
Locus ID:
gene:TRIDC2BG015240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 95999751 | 96012561 | + | gene:TRIDC2BG015240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 185,859.06 Da | 46.70 | 83.53 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18070 | DEXQc_SHPRH | 292 | 700 | 1.11237E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1437 | 1578 | 7.73456E-33 | - |
| CDD | cd15517 | PHD_TCF19_like | 415 | 455 | 4.06216E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1448 | 1567 | 3.5E-5 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 295 | 794 | 2.0E-89 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 606 | 1592 | 2.41E-31 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 405 | 449 | 7.97E-9 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1349 | 1404 | 9.89E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 283 | 698 | 5.14E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 356 | 396 | 2.8E-5 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1342 | 1416 | 1.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1417 | 1621 | 1.3E-36 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 488 | 701 | 1.0E-33 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 403 | 456 | 8.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 1354 | 1399 | 6.5E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 288 | 670 | 5.5E-20 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1471 | 1567 | 1.7E-4 | IPR001650 |
| SMART | SM00249 | PHD_3 | 412 | 494 | 2.9E-8 | IPR001965 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 469 | 662 | 11.766563 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1443 | 1619 | 9.786917 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1354 | 1400 | 10.748424 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 413 | 493 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1628 | 1647 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40770.1 | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding. | 0 |
| RefSeq | XP_037483494.1 | E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Triticum dicoccoides] | 0 |
| Q7TPQ3 | E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C0E0 | Helicase ATP-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG015240.