Basic Information
Locus ID:
gene:TRIDC2BG013170
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 77152800 | 77157438 | + | gene:TRIDC2BG013170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 133,303.92 Da | 79.98 | 50.15 | -1.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16574 | RING-HC_Topors | 753 | 795 | 3.9092E-18 | - |
| Pfam | PF13639 | Ring finger domain | 752 | 795 | 9.0E-7 | IPR001841 |
| Pfam | PF00628 | PHD-finger | 846 | 891 | 3.7E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 820 | 890 | 7.09E-15 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 752 | 801 | 5.74E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 748 | 809 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 814 | 895 | 1.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 753 | 794 | 2.0E-5 | IPR001841 |
| SMART | SM00249 | PHD_3 | 845 | 890 | 3.8E-8 | IPR001965 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 753 | 795 | 12.297489 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 843 | 892 | 9.739201 | IPR019787 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 772 | 781 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 453 | - | - |
| Coils | Coil | Coil | 363 | 390 | - | - |
| Coils | Coil | Coil | 239 | 259 | - | - |
| Coils | Coil | Coil | 449 | 469 | - | - |
| Coils | Coil | Coil | 320 | 347 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_044322010.1 | trichohyalin-like [Triticum aestivum] | 0 |
| Q23541 | Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans OX=6239 GN=rbr-2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6BZX3 | PHD and RING finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG013170.