Basic Information
Locus ID:
gene:TRIDC2BG009670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
HIRAN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 49082271 | 49088014 | - | gene:TRIDC2BG009670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 119,150.91 Da | 48.19 | 86.36 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 471 | 694 | 2.05224E-95 | - |
| CDD | cd18793 | SF2_C_SNF | 896 | 1021 | 1.35544E-58 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 900 | 1010 | 1.7E-17 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 408 | 773 | 4.7E-80 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 825 | 873 | 2.1E-9 | - |
| Pfam | PF08797 | HIRAN domain | 178 | 277 | 3.0E-10 | IPR014905 |
| SUPERFAMILY | SSF57850 | RING/U-box | 825 | 880 | 8.62E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 391 | 694 | 6.65E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 703 | 1057 | 5.32E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 459 | 706 | 5.6E-56 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 710 | 1063 | 2.9E-71 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 809 | 880 | 2.4E-13 | IPR013083 |
| SMART | SM00490 | helicmild6 | 927 | 1010 | 2.1E-20 | IPR001650 |
| SMART | SM00487 | ultradead3 | 401 | 664 | 9.2E-28 | IPR014001 |
| SMART | SM00910 | HIRAN_2 | 171 | 281 | 6.4E-5 | IPR014905 |
| SMART | SM00184 | ring_2 | 827 | 867 | 2.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 827 | 868 | 12.371254 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 898 | 1063 | 16.230259 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 464 | 656 | 17.67672 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 843 | 852 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43530.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_037483230.1 | DNA repair protein RAD5B-like [Triticum dicoccoides] | 0 |
| Q9FIY7 | DNA repair protein RAD5B OS=Arabidopsis thaliana OX=3702 GN=RAD5B PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6BYW9 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG009670.