Basic Information
Locus ID:
gene:TRIDC2BG005280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
von Willebrand factor (vWF) type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 23618324 | 23622565 | - | gene:TRIDC2BG005280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 80,988.68 Da | 63.18 | 71.10 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13519 | von Willebrand factor type A domain | 322 | 437 | 2.9E-13 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 125 | 154 | 2.4E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 178 | 7.07E-9 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 317 | 446 | 2.23E-15 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 321 | 493 | 1.5E-19 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 191 | 2.6E-7 | IPR013083 |
| SMART | SM00327 | VWA_4 | 319 | 519 | 7.6E-5 | IPR002035 |
| SMART | SM00184 | ring_2 | 125 | 171 | 1.7E-4 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 321 | 525 | 11.644094 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 172 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 261 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49665.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037482991.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6BY07 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG005280.