Basic Information
Locus ID:
gene:TRIDC2BG001730
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 7808800 | 7830044 | - | gene:TRIDC2BG001730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 57,300.12 Da | 54.07 | 68.53 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 142 | 194 | 2.41804E-30 | - |
| Pfam | PF00412 | LIM domain | 142 | 197 | 9.1E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 291 | 499 | 1.7E-102 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 167 | 1.77E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 223 | 2.58E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 136 | 216 | 2.7E-15 | - |
| SMART | SM00726 | uim | 46 | 65 | 0.071 | IPR003903 |
| SMART | SM00132 | lim_4 | 141 | 193 | 2.8E-11 | IPR001781 |
| SMART | SM00726 | uim | 77 | 96 | 0.019 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 140 | 200 | 12.1276 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 9.536693 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 10.178525 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 142 | 176 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 124 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_037482749.1 | protein DA1-like [Triticum dicoccoides] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6BWR0 | LIM zinc-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG001730.