Basic Information
Locus ID:
gene:TRIDC2AG082410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 774881192 | 774885612 | - | gene:TRIDC2AG082410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 55,891.58 Da | 66.91 | 74.20 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 14 | 169 | 1.65066E-47 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 240 | 282 | 5.8203E-23 | - |
| Pfam | PF02225 | PA domain | 59 | 148 | 6.8E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 239 | 282 | 3.8E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 155 | 1.09E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 288 | 2.99E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 286 | 4.9E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 29 | 163 | 3.2E-26 | - |
| SMART | SM00184 | ring_2 | 240 | 281 | 1.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 282 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 481 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_037480195.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B7Y6 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG082410.