Basic Information
Locus ID:
gene:TRIDC2AG076960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
sorting-associated protein 41-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 750734329 | 750741245 | - | gene:TRIDC2AG076960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 99,012.38 Da | 36.46 | 92.12 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00637 | Region in Clathrin and VPS | 563 | 693 | 1.6E-19 | IPR000547 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 197 | 4.03E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 231 | 8.0E-16 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 487 | 756 | 1.4E-14 | IPR011990 |
| SMART | SM00299 | CLH_2 | 550 | 697 | 2.1E-26 | IPR000547 |
| SMART | SM00320 | WD40_4 | 111 | 147 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 23 | 61 | 0.011 | IPR001680 |
| PIRSF | PIRSF028921 | Vps41 | 1 | 852 | 0.0 | IPR016902 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 550 | 697 | 35.876343 | IPR000547 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 871 | - | - |
| Coils | Coil | Coil | 648 | 675 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08190.1 | vacuolar protein sorting 41. Might be involved in protein sorting to the vacuole. | 0 |
| RefSeq | XP_037479952.1 | vacuolar protein sorting-associated protein 41 homolog [Triticum dicoccoides] | 0 |
| P93231 | Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B8E4 | Vacuolar protein sorting-associated protein 41 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG076960.