Basic Information
Locus ID:
gene:TRIDC2AG071050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 726550687 | 726554983 | - | gene:TRIDC2AG071050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 40,509.12 Da | 44.32 | 76.95 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08069 | MPN_RPN11_CSN5 | 49 | 321 | 1.48956E-153 | - |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 58 | 168 | 8.4E-33 | IPR000555 |
| Pfam | PF18323 | Cop9 signalosome subunit 5 C-terminal domain | 256 | 336 | 7.5E-27 | IPR040961 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 61 | 177 | 3.4E-13 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 3 | 262 | 9.9E-112 | - |
| SMART | SM00232 | pad1_6 | 59 | 196 | 2.2E-45 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 60 | 197 | 30.959578 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 310 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22920.1 | COP9 signalosome 5A. AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. | 0 |
| RefSeq | XP_037479662.1 | COP9 signalosome complex subunit 5-like [Triticum dicoccoides] | 0 |
| Q8H936 | COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B6F3 | MPN domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG071050.