Basic Information
Locus ID:
gene:TRIDC2AG069210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 716536252 | 716538643 | + | gene:TRIDC2AG069210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 44,420.88 Da | 52.71 | 77.05 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 184 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 229 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 288 | 0.056 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 384 | 2.38E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 396 | 6.6E-88 | IPR015943 |
| SMART | SM00320 | WD40_4 | 190 | 231 | 8.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 184 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 384 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 136 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 339 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 289 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 184 | 8.971213 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037479559.1 | protein transport protein SEC13 homolog B-like [Triticum dicoccoides] | 0 |
| Q9V3J4 | Protein SEC13 homolog OS=Drosophila melanogaster OX=7227 GN=Sec13 PE=1 SV=1 | 0 | |
| TrEMBL | M7ZSA3 | Protein SEC13-like protein OS=Triticum urartu OX=4572 GN=TRIUR3_14479 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG069210.