Basic Information
Locus ID:
gene:TRIDC2AG067760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 710972356 | 710978828 | - | gene:TRIDC2AG067760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 115,193.89 Da | 47.38 | 78.07 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 255 | 607 | 2.48773E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 868 | 1000 | 1.13488E-57 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 892 | 990 | 3.4E-14 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 744 | 780 | 4.0E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 269 | 684 | 1.4E-67 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 616 | 1047 | 1.21E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 713 | 781 | 5.52E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 239 | 607 | 2.34E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 622 | 727 | 2.1E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 376 | 463 | 4.7E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 226 | 313 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 728 | 786 | 2.0E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 821 | 1043 | 6.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 466 | 621 | 2.8E-31 | IPR038718 |
| SMART | SM00487 | ultradead3 | 251 | 574 | 2.4E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 907 | 990 | 2.8E-19 | IPR001650 |
| SMART | SM00184 | ring_2 | 724 | 775 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 392 | 569 | 11.313871 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 724 | 776 | 11.382803 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 871 | 1043 | 14.203644 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 753 | 762 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 389 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037479473.1 | helicase-like transcription factor CHR28 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TMN1 | Helicase ATP-binding domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG067760.