Basic Information
Locus ID:
gene:TRIDC2AG067190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 708991080 | 708993174 | + | gene:TRIDC2AG067190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 73,562.36 Da | 43.05 | 105.41 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 287 | 329 | 1.35529E-22 | - |
| Pfam | PF04564 | U-box domain | 286 | 350 | 4.4E-15 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 420 | 456 | 3.0E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 387 | 668 | 3.24E-32 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 356 | 4.24E-22 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 361 | 483 | 2.6E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 484 | 672 | 1.3E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 355 | 1.1E-22 | IPR013083 |
| SMART | SM00185 | arm_5 | 458 | 499 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 542 | 582 | 81.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 286 | 349 | 5.3E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 417 | 457 | 0.041 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 282 | 356 | 29.953306 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 10.9374 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60190.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037474691.1 | U-box domain-containing protein 19-like [Triticum dicoccoides] | 0 |
| O80742 | U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B4W6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG067190.