Basic Information
Locus ID:
gene:TRIDC2AG065100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 697586965 | 697591950 | - | gene:TRIDC2AG065100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 61,363.05 Da | 45.50 | 87.06 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 95 | 365 | 1.50362E-133 | - |
| Pfam | PF13499 | EF-hand domain pair | 484 | 540 | 9.2E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 414 | 474 | 4.8E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 95 | 366 | 5.4E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 95 | 380 | 2.02E-80 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 390 | 540 | 4.0E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 181 | 375 | 3.0E-53 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 376 | 547 | 7.4E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 97 | 180 | 8.0E-27 | - |
| SMART | SM00054 | efh_1 | 485 | 513 | 0.0015 | IPR002048 |
| SMART | SM00220 | serkin_6 | 95 | 366 | 3.9E-92 | IPR000719 |
| SMART | SM00054 | efh_1 | 519 | 547 | 16.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 413 | 441 | 4.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 449 | 477 | 0.08 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 445 | 480 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 409 | 444 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 95 | 366 | 46.095932 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 481 | 516 | 14.680779 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 494 | 506 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 215 | 227 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 422 | 434 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 101 | 124 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 458 | 470 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 74 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 0 |
| RefSeq | XP_037479297.1 | calcium-dependent protein kinase 13-like [Triticum dicoccoides] | 0 |
| Q9FXQ3 | Calcium-dependent protein kinase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B563 | Calcium-dependent protein kinase 26 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG065100.