HalophFGD

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Basic Information
Locus ID: gene:TRIDC2AG063940
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: Utp13 specific WD40 associated domain
Maps and Mapping Data
Chromosome Start End Strand ID
2A 689890358 689896546 + gene:TRIDC2AG063940
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.43 88,696.23 Da 38.40 87.77 -0.17
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 2 402 5.09668E-53 -
CDD cd00200 WD40 278 580 1.61994E-63 -
Pfam PF00400 WD domain, G-beta repeat 365 402 6.6E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 115 152 2.1E-5 IPR001680
Pfam PF08625 Utp13 specific WD40 associated domain 603 736 3.5E-44 IPR013934
Pfam PF00400 WD domain, G-beta repeat 464 496 4.4E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 501 538 6.0E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 29 66 3.1E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 544 580 0.21 IPR001680
Pfam PF00400 WD domain, G-beta repeat 320 360 8.1E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 72 110 7.4E-7 IPR001680
Pfam PF00400 WD domain, G-beta repeat 425 455 1.9E-4 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 2 223 1.41E-53 IPR036322
SUPERFAMILY SSF50978 WD40 repeat-like 274 580 1.1E-71 IPR036322
Gene3D G3DSA:2.130.10.10 - 273 460 2.6E-37 IPR015943
Gene3D G3DSA:2.130.10.10 - 1 272 3.4E-55 IPR015943
Gene3D G3DSA:2.130.10.10 - 461 625 7.6E-39 IPR015943
SMART SM00320 WD40_4 416 455 1.1E-4 IPR001680
SMART SM00320 WD40_4 500 539 1.6E-8 IPR001680
SMART SM00320 WD40_4 69 110 1.5E-7 IPR001680
SMART SM00320 WD40_4 363 403 8.7E-9 IPR001680
SMART SM00320 WD40_4 113 152 1.8E-8 IPR001680
SMART SM00320 WD40_4 275 315 9.9 IPR001680
SMART SM00320 WD40_4 318 360 6.3E-6 IPR001680
SMART SM00320 WD40_4 542 581 3.0E-5 IPR001680
SMART SM00320 WD40_4 27 66 2.7E-10 IPR001680
SMART SM00320 WD40_4 458 497 2.6E-7 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 507 548 13.582925 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 325 362 9.361965 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 120 154 11.787407 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 549 580 10.374778 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 120 161 14.685726 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 465 498 11.101955 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 465 506 14.78598 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 325 369 11.978851 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 423 456 10.337415 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 34 68 11.64467 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1 27 8.65015 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1 33 11.410742 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 76 119 14.986489 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 370 402 9.731054 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 370 402 11.64467 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 34 68 9.731054 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 76 113 11.602863 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 423 456 12.413288 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 507 544 10.179234 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 549 580 8.729241 -
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 97 111 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 139 153 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 347 361 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 53 67 - IPR019775
PRINTS PR00320 G protein beta WD-40 repeat signature 97 111 2.6E-8 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 347 361 2.6E-8 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 390 404 2.6E-8 IPR020472
MobiDBLite mobidb-lite consensus disorder prediction 747 806 - -
MobiDBLite mobidb-lite consensus disorder prediction 791 806 - -
Gene Ontology
Biological Process:
GO:0006364 (rRNA processing)
Molecular Function:
GO:0005515 (protein binding)
Cellular Component:
GO:0032040 (small-subunit processome)
KEGG Pathway
KO Term:
K14555 (U3 small nucleolar RNA-associated protein 13)
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G16750.1 Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. 0
RefSeq XP_037479229.1 transducin beta-like protein 3 [Triticum dicoccoides] 0
Swiss-Prot Q9LFE2 Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 0
TrEMBL A0A8R7TM83 Utp13 domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC2AG063940.

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