Basic Information
Locus ID:
gene:TRIDC2AG063230
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Cobalamin synthesis protein cobW C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 684181379 | 684183801 | + | gene:TRIDC2AG063230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 56,225.87 Da | 48.10 | 75.61 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 311 | 7.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 365 | 0.024 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 194 | 252 | 6.2E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 163 | 493 | 9.16E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 486 | 8.8E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 436 | 483 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 268 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 5.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 408 | 310.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 227 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 279 | 313 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 279 | 320 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 298 | 312 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_037479172.1 | cell division cycle 20.2, cofactor of APC complex-like [Triticum dicoccoides] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B3R8 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG063230.