Basic Information
Locus ID:
gene:TRIDC2AG058960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 659514150 | 659516761 | - | gene:TRIDC2AG058960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 24,102.48 Da | 29.70 | 107.98 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 153 | 228 | 4.74555E-50 | - |
| CDD | cd01803 | Ubl_ubiquitin | 1 | 73 | 1.03681E-47 | - |
| Pfam | PF00240 | Ubiquitin family | 155 | 226 | 1.5E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 73 | 3.0E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 101 | 150 | 7.1E-22 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 101 | 152 | 4.28E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 152 | 229 | 1.12E-34 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 3.05E-32 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 234 | 4.2E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 98 | 152 | 4.1E-30 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 2.2E-44 | - |
| SMART | SM00213 | ubq_7 | 153 | 224 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 78 | 148 | 2.0E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 153 | 228 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 28.579422 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 67 | 152 | 24.834053 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 103 | 128 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 179 | 204 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 184 | 204 | 1.4E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 163 | 183 | 1.4E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 205 | 226 | 1.4E-38 | IPR019956 |
| Coils | Coil | Coil | 102 | 105 | - | - |
| Coils | Coil | Coil | 73 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_016671287.1 | polyubiquitin 11-like [Gossypium hirsutum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6YRF0 | Polyubiquitin OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG058960.