Basic Information
Locus ID:
gene:TRIDC2AG058080
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 649603022 | 649606049 | - | gene:TRIDC2AG058080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 63,992.78 Da | 45.08 | 68.87 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 162 | 7.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 439 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 306 | 5.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 263 | 3.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 574 | 1.48E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 481 | 4.6E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 540 | 575 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 264 | 6.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 1.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 439 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 397 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 8.3E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 234 | 273 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 234 | 265 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 162 | 16.222963 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 416 | 439 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 307 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 162 | 13.342854 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 307 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 251 | 265 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 5.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 5.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 5.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 70 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037478836.1 | WD repeat-containing protein YMR102C-like [Triticum dicoccoides] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B482 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG058080.