halophFGD

Basic Information

Locus ID: gene:TRIDC2AG057120

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Anaphase-promoting complex subunit 11 RING-H2 finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
2A	641000157	641001098	+	gene:TRIDC2AG057120

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.13	19,814.53 Da	64.44	79.16	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	114	158	2.0E-11	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	105	163	4.35E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	81	163	2.3E-17	IPR013083
SMART	SM00184	ring_2	115	157	3.1E-6	IPR001841
SMART	SM00744	ringv_2	114	158	0.0015	IPR011016
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	115	158	12.592549	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	90	104	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	82	108	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K16281 (RING-H2 zinc finger protein RHA1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G05810.1	RING/U-box superfamily protein.
RefSeq	XP_037478773.1	E3 ubiquitin-protein ligase EL5-like [Triticum dicoccoides]
Swiss-Prot	Q5EAE9	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2
TrEMBL	A0A8R7PHL9	RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC2AG057120.